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ATLAS

Publications

List of all ATLAS publications

 

List of selected publications

2021

Van Hauwaert EL, Gammelmark E, Sárvári AK, Larsen L, Nielsen R, Madsen JGS et al. Isolation of nuclei from mouse white adipose tissues for single-nucleus genomics. STAR Protocols. (2021) 

Loft A, Alfaro AJ, Schmidt SF, Pedersen FB, Terkelsen MK, Puglia M et al. Liver-fibrosis-activated transcriptional networks govern hepatocyte reprogramming and intra-hepatic communication. Cell Metabolism. (2021)

Sárvári AK, Van Hauwaert EL, Markussen LK, Gammelmark E, Marcher A-B, Ebbesen MF et al. Plasticity of Epididymal Adipose Tissue in Response to Diet-Induced Obesity at Single-Nucleus Resolution. Cell Metabolism. (2021)

Loft A, Herzig S, Schmidt SF. Purification of GFP-tagged nuclei from frozen livers of INTACT mice for RNA- and ATAC-sequencing. STAR Protocols. (2021)

Wernberg CW, Ravnskjaer K, Lauridsen MM, Thiele M. The Role of Diagnostic Biomarkers, Omics Strategies, and Single-Cell Sequencing for Nonalcoholic Fatty Liver Disease in Severely Obese Patients. Journal of Clinical Medicine. (2021)

2020

Barrio-Hernandez, Jafari A, Rigbolt KTG, Hallenborg P, Sanchez-Quiles V, Skovrind I, Akimov V, Kratchmarova I, Dengjel J, Kassem M, Blagoev B. 
Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow-derived stromal stem cells. 
Genome Research (2020)

2019

Rauch A, Haakonsson AK, Madsen JGS, Larsen M, Forss I, Madsen MR, Van Hauwaert EL,  Wiwie C, Jespersen NZ, Tencerova M, Nielsen R, Larsen BD, Richard Röttger, Baumbach J, Scheele C, Kassem M and Mandrup S.
Osteogenesis depends on commissioning of a network of stem cell transcripition factors that act as repressors of adipogenesis.
Nature Genetics 51 (2019)

Lindhardt Sæderup (Madsen), K., Revsholm, J. F. , Richardt, P. B., Hill Christiansen, S., Hennig, D., Moestrup, S. K. & Graversen, J. H.
Using the hemoglobin-binding Staphylococcus aureus protein IsdH to enable plasma analysis of hemolyzed blood samples
Clinical Chemistry and Laboratory Medicine 57 11 (2019)

2018

Akimov V., Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B.
UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites.
Nature structural & Molecular biology
(2018)