IMAGE
IMAGE is a powerful, precise and novel method for unbiased prediction of key transcription factors driving specific gene programs based on analysis of gene expression data and enhancer marks.
Download the version used in the paper
iRNA-seq
iRNA-seq is an easy, sensitive and accurate novel computational method, for genome-wide assessment of transcriptional activity based on analysis of intron coverage from total RNA-seq data. (Madsen et al. 2014, Nucleic acid research)